Package: rPACI 0.2.2

Darío Ramos-López

rPACI: Placido Analysis of Corneal Irregularity

Analysis of corneal data obtained from a Placido disk corneal topographer with calculation of irregularity indices. This package performs analyses of corneal data obtained from a Placido disk corneal topographer, with the calculation of the Placido irregularity indices and the posterior analysis. The package is intended to be easy to use by a practitioner, providing a simple interface and yielding easily interpretable results. A corneal topographer is an ophthalmic clinical device that obtains measurements in the cornea (the anterior part of the eye). A Placido disk corneal topographer makes use of the Placido disk [Rowsey et al. (1981)]<doi:10.1001/archopht.1981.03930011093022>, which produce a circular pattern of measurement nodes. The raw information measured by such a topographer is used by practitioners to analyze curvatures, to study optical aberrations, or to diagnose specific conditions of the eye (e.g. keratoconus, an important corneal disease). The rPACI package allows the calculation of the corneal irregularity indices described in [Castro-Luna et al. (2020)]<doi:10.1016%2Fj.clae.2019.12.006>, [Ramos-Lopez et al. (2013)]<doi:10.1097%2FOPX.0b013e3182843f2a>, and [Ramos-Lopez et al. (2011)]<doi:10.1097/opx.0b013e3182279ff8>. It provides a simple interface to read corneal topography data files as exported by a typical Placido disk topographer, to compute the irregularity indices mentioned before, and to display summary plots that are easy to interpret for a clinician.

Authors:Darío Ramos-López [aut, cre], Ana D. Maldonado [aut]

rPACI_0.2.2.tar.gz
rPACI_0.2.2.zip(r-4.5)rPACI_0.2.2.zip(r-4.4)
rPACI_0.2.2.tgz(r-4.4-any)
rPACI_0.2.2.tar.gz(r-4.5-noble)rPACI_0.2.2.tar.gz(r-4.4-noble)
rPACI_0.2.2.tgz(r-4.4-emscripten)
rPACI.pdf |rPACI.html
rPACI/json (API)
NEWS

# Install 'rPACI' in R:
install.packages('rPACI', repos = c('https://dariorlual.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dariorlual/rpaci/issues

On CRAN:

4.30 score 1 stars 9 scripts 161 downloads 11 exports 69 dependencies

Last updated 3 years agofrom:c2a8f76ef3. Checks:OK: 1 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 06 2024
R-4.5-winNOTENov 06 2024
R-4.5-linuxNOTENov 06 2024
R-4.4-winNOTENov 06 2024
R-4.4-macNOTENov 06 2024

Exports:analyzeDatasetanalyzeEvolutionanalyzeFileanalyzeFoldercomputePlacidoIndicesplotSingleCorneareadCSOreadFilereadrPACIsimulateDatawriterPACI

Dependencies:abindbackportsbnlearnbootbroomcarcarDataclicolorspacecorrplotcowplotcpp11DerivdoBydplyrfansifarverFormulagenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtableisobandlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrmunsellnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpolynompurrrquantregR6RColorBrewerRcppRcppEigenrlangrstatixscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr

Corneal topographers and data formats

Rendered fromtopographersDataFormat.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2021-11-03
Started: 2021-08-11

Mathematical definition of the Placido irregularity indices

Rendered fromindicesDefinition.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2021-08-12
Started: 2021-08-11

Simulating corneal datasets

Rendered fromsimulating.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2021-08-12
Started: 2021-08-11

Workflow of the rPACI package

Rendered frompackageUsage.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2021-11-03
Started: 2021-08-11